STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps24e30S ribosomal protein S24e; sp|O26367|RS24_METTH;evalue=9e-019; PctID=50.57; score=92.0; {ECO:0000255|HAMAP-Rule:MF_00545}; Belongs to the eukaryotic ribosomal protein eS24 family. (103 aa)    
Predicted Functional Partners:
rpl30e
50S ribosomal protein L30e; sp|O27127|RL30E_METTH;evalue=8e-039; PctID=74.49; score=158; Belongs to the eukaryotic ribosomal protein eL30 family.
   
 
 0.999
rps12
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
   
 0.999
rps7
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.
   
 0.999
rps10
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 0.999
rps3ae
30S ribosomal protein S3Ae; sp|O27630|RS3A_METTH;evalue=1e-074; PctID=70.31; score=278; {ECO:0000255|HAMAP-Rule:MF_00359}; Belongs to the eukaryotic ribosomal protein eS1 family.
 
 0.999
rpl40e
50S ribosomal protein L40e; sp|O26653|RL40_METTH;evalue=3e-022; PctID=95.83; score=103; {ECO:0000255|HAMAP-Rule:MF_00788}; Belongs to the eukaryotic ribosomal protein eL40 family.
 
 0.999
rpl12
50S ribosomal protein L12; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family.
  
 
 0.999
rpl11
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.999
rpl15e
50S ribosomal protein L15e; sp|Q2NEY3|RL15E_METST;evalue=4e-068; PctID=68.51; score=256; {ECO:0000255|HAMAP-Rule:MF_00256}; Belongs to the eukaryotic ribosomal protein eL15 family.
 
 
 0.999
rps17e
30S ribosomal protein S17e; sp|O26894|RS17E_METTH;evalue=7e-023; PctID=81.97; score=105; {ECO:0000255|HAMAP-Rule:MF_00511}; Belongs to the eukaryotic ribosomal protein eS17 family.
 
 0.999
Your Current Organism:
Methanobacterium congolense
NCBI taxonomy Id: 118062
Other names: DSM 7095, M. congolense, Methanobacterium congolense Cuzin et al. 2001, OCM 786, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.