STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl31e50S ribosomal protein L31e; sp|O27649|RL31_METTH;evalue=2e-027; PctID=69.14; score=120; Belongs to the ribosomal protein L31e family. (81 aa)    
Predicted Functional Partners:
rpl30e
50S ribosomal protein L30e; sp|O27127|RL30E_METTH;evalue=8e-039; PctID=74.49; score=158; Belongs to the eukaryotic ribosomal protein eL30 family.
  
 0.999
rps3ae
30S ribosomal protein S3Ae; sp|O27630|RS3A_METTH;evalue=1e-074; PctID=70.31; score=278; {ECO:0000255|HAMAP-Rule:MF_00359}; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 
 0.999
rpl12
50S ribosomal protein L12; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family.
 
 0.999
rpl10
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
 
 0.999
rpl15e
50S ribosomal protein L15e; sp|Q2NEY3|RL15E_METST;evalue=4e-068; PctID=68.51; score=256; {ECO:0000255|HAMAP-Rule:MF_00256}; Belongs to the eukaryotic ribosomal protein eL15 family.
  
 0.999
rps17e
30S ribosomal protein S17e; sp|O26894|RS17E_METTH;evalue=7e-023; PctID=81.97; score=105; {ECO:0000255|HAMAP-Rule:MF_00511}; Belongs to the eukaryotic ribosomal protein eS17 family.
 
 
 0.999
rpl13/rps9
Fused L13/S9 ribosomal protein; L13 protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (By similarity). the 30S ribosomal subunit (By similarity). protein L13P family. protein S9P family. ribosomal subunit, and that they are not known to contact each other in the ribosome, this may be incorrectly predicted and should perhaps be two separate genes; sp|O26146|RLSX_METTH;evalue=9e-049; PctID=71.43; score=191.
   
 0.999
rpl13
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 0.999
rpl18e
50S ribosomal protein L18e; sp|O26145|RL18E_METTH;evalue=3e-035; PctID=61.86; score=147; {ECO:0000255|HAMAP-Rule:MF_00329}; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 
 0.999
rps13
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.
   
 
 0.999
Your Current Organism:
Methanobacterium congolense
NCBI taxonomy Id: 118062
Other names: DSM 7095, M. congolense, Methanobacterium congolense Cuzin et al. 2001, OCM 786, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.