STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioCDBiotin biosynthesis bifunctional protein BioCD; Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring. phosphate + dethiobiotin. carrier protein] = S-adenosyl-L-homocysteine + malonyl-[acyl-carrier protein] methyl ester. Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence=; 7,8-diaminononanoate: step 1/2. methyltransferase superfamily. synthetase family; sp|Q2KXN6|BIOCD_BORA1;evalue=1e-008; PctID=34.26; score=60.1. (226 aa)    
Predicted Functional Partners:
rps5
30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
    
 0.853
rps24e
30S ribosomal protein S24e; sp|O26367|RS24_METTH;evalue=9e-019; PctID=50.57; score=92.0; {ECO:0000255|HAMAP-Rule:MF_00545}; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 0.814
rps3ae
30S ribosomal protein S3Ae; sp|O27630|RS3A_METTH;evalue=1e-074; PctID=70.31; score=278; {ECO:0000255|HAMAP-Rule:MF_00359}; Belongs to the eukaryotic ribosomal protein eS1 family.
  
  0.786
rps6e
30S ribosomal protein S6e; sp|O26360|RS6E_METTH;evalue=4e-036; PctID=57.94; score=149; {ECO:0000255|HAMAP-Rule:MF_00512}; Belongs to the eukaryotic ribosomal protein eS6 family.
  
  0.784
rps17p
30S ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
 0.780
rps4
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
 
 0.776
rps4e
30S ribosomal protein S4e; sp|O26123|RS4E_METTH;evalue=1e-098; PctID=69.71; score=358; Belongs to the eukaryotic ribosomal protein eS4 family.
   
  0.776
rps12
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
  
 0.769
rps15
30S ribosomal protein S15; sp|O27474|RS15_METTH;evalue=4e-050; PctID=70.68; score=196; {ECO:0000255|HAMAP-Rule:MF_01343}.
  
 0.768
rps8
30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
   
  0.736
Your Current Organism:
Methanobacterium congolense
NCBI taxonomy Id: 118062
Other names: DSM 7095, M. congolense, Methanobacterium congolense Cuzin et al. 2001, OCM 786, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.