Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| nob1 | rpl13 | MCBB_1511 | MCBB_1345 | Endoribonuclease Nob1; Toxic component of a toxin-antitoxin (TA) module. Processes pre-16S-rRNA at its 3' end (the D-site) to yield the mature 3' end (By similarity). Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence=; Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence=; Note=Binds 1 zinc ion per subunit; PINc domain which binds Mn(2+), rRNA substrate and probably has endoribonuclease activity, and the C-terminal zinc ribbon domain which also binds rRNA substrate. Rule:MF_00265}; sp|O27890|NOB1_METTH;evalue=1e-041; PctID=48.10; score=168. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.949 |
| nob1 | rpl13/rps9 | MCBB_1511 | MCBB_1344 | Endoribonuclease Nob1; Toxic component of a toxin-antitoxin (TA) module. Processes pre-16S-rRNA at its 3' end (the D-site) to yield the mature 3' end (By similarity). Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence=; Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence=; Note=Binds 1 zinc ion per subunit; PINc domain which binds Mn(2+), rRNA substrate and probably has endoribonuclease activity, and the C-terminal zinc ribbon domain which also binds rRNA substrate. Rule:MF_00265}; sp|O27890|NOB1_METTH;evalue=1e-041; PctID=48.10; score=168. | Fused L13/S9 ribosomal protein; L13 protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (By similarity). the 30S ribosomal subunit (By similarity). protein L13P family. protein S9P family. ribosomal subunit, and that they are not known to contact each other in the ribosome, this may be incorrectly predicted and should perhaps be two separate genes; sp|O26146|RLSX_METTH;evalue=9e-049; PctID=71.43; score=191. | 0.949 |
| nob1 | rps10 | MCBB_1511 | MCBB_0262 | Endoribonuclease Nob1; Toxic component of a toxin-antitoxin (TA) module. Processes pre-16S-rRNA at its 3' end (the D-site) to yield the mature 3' end (By similarity). Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence=; Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence=; Note=Binds 1 zinc ion per subunit; PINc domain which binds Mn(2+), rRNA substrate and probably has endoribonuclease activity, and the C-terminal zinc ribbon domain which also binds rRNA substrate. Rule:MF_00265}; sp|O27890|NOB1_METTH;evalue=1e-041; PctID=48.10; score=168. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.994 |
| nob1 | rps12 | MCBB_1511 | MCBB_0258 | Endoribonuclease Nob1; Toxic component of a toxin-antitoxin (TA) module. Processes pre-16S-rRNA at its 3' end (the D-site) to yield the mature 3' end (By similarity). Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence=; Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence=; Note=Binds 1 zinc ion per subunit; PINc domain which binds Mn(2+), rRNA substrate and probably has endoribonuclease activity, and the C-terminal zinc ribbon domain which also binds rRNA substrate. Rule:MF_00265}; sp|O27890|NOB1_METTH;evalue=1e-041; PctID=48.10; score=168. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. | 0.994 |
| nob1 | rps19 | MCBB_1511 | MCBB_1377 | Endoribonuclease Nob1; Toxic component of a toxin-antitoxin (TA) module. Processes pre-16S-rRNA at its 3' end (the D-site) to yield the mature 3' end (By similarity). Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence=; Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence=; Note=Binds 1 zinc ion per subunit; PINc domain which binds Mn(2+), rRNA substrate and probably has endoribonuclease activity, and the C-terminal zinc ribbon domain which also binds rRNA substrate. Rule:MF_00265}; sp|O27890|NOB1_METTH;evalue=1e-041; PctID=48.10; score=168. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.995 |
| nob1 | rps4 | MCBB_1511 | MCBB_1349 | Endoribonuclease Nob1; Toxic component of a toxin-antitoxin (TA) module. Processes pre-16S-rRNA at its 3' end (the D-site) to yield the mature 3' end (By similarity). Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence=; Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence=; Note=Binds 1 zinc ion per subunit; PINc domain which binds Mn(2+), rRNA substrate and probably has endoribonuclease activity, and the C-terminal zinc ribbon domain which also binds rRNA substrate. Rule:MF_00265}; sp|O27890|NOB1_METTH;evalue=1e-041; PctID=48.10; score=168. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.995 |
| nob1 | rps7 | MCBB_1511 | MCBB_0259 | Endoribonuclease Nob1; Toxic component of a toxin-antitoxin (TA) module. Processes pre-16S-rRNA at its 3' end (the D-site) to yield the mature 3' end (By similarity). Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence=; Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence=; Note=Binds 1 zinc ion per subunit; PINc domain which binds Mn(2+), rRNA substrate and probably has endoribonuclease activity, and the C-terminal zinc ribbon domain which also binds rRNA substrate. Rule:MF_00265}; sp|O27890|NOB1_METTH;evalue=1e-041; PctID=48.10; score=168. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. | 0.995 |
| nob1 | rps8 | MCBB_1511 | MCBB_1366 | Endoribonuclease Nob1; Toxic component of a toxin-antitoxin (TA) module. Processes pre-16S-rRNA at its 3' end (the D-site) to yield the mature 3' end (By similarity). Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence=; Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence=; Note=Binds 1 zinc ion per subunit; PINc domain which binds Mn(2+), rRNA substrate and probably has endoribonuclease activity, and the C-terminal zinc ribbon domain which also binds rRNA substrate. Rule:MF_00265}; sp|O27890|NOB1_METTH;evalue=1e-041; PctID=48.10; score=168. | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.994 |
| nob1 | rsmA | MCBB_1511 | MCBB_2215 | Endoribonuclease Nob1; Toxic component of a toxin-antitoxin (TA) module. Processes pre-16S-rRNA at its 3' end (the D-site) to yield the mature 3' end (By similarity). Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence=; Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence=; Note=Binds 1 zinc ion per subunit; PINc domain which binds Mn(2+), rRNA substrate and probably has endoribonuclease activity, and the C-terminal zinc ribbon domain which also binds rRNA substrate. Rule:MF_00265}; sp|O27890|NOB1_METTH;evalue=1e-041; PctID=48.10; score=168. | Putative ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily. | 0.961 |
| nob1 | rtcA | MCBB_1511 | MCBB_1386 | Endoribonuclease Nob1; Toxic component of a toxin-antitoxin (TA) module. Processes pre-16S-rRNA at its 3' end (the D-site) to yield the mature 3' end (By similarity). Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence=; Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence=; Note=Binds 1 zinc ion per subunit; PINc domain which binds Mn(2+), rRNA substrate and probably has endoribonuclease activity, and the C-terminal zinc ribbon domain which also binds rRNA substrate. Rule:MF_00265}; sp|O27890|NOB1_METTH;evalue=1e-041; PctID=48.10; score=168. | RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.693 |
| rpl13 | nob1 | MCBB_1345 | MCBB_1511 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Endoribonuclease Nob1; Toxic component of a toxin-antitoxin (TA) module. Processes pre-16S-rRNA at its 3' end (the D-site) to yield the mature 3' end (By similarity). Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence=; Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence=; Note=Binds 1 zinc ion per subunit; PINc domain which binds Mn(2+), rRNA substrate and probably has endoribonuclease activity, and the C-terminal zinc ribbon domain which also binds rRNA substrate. Rule:MF_00265}; sp|O27890|NOB1_METTH;evalue=1e-041; PctID=48.10; score=168. | 0.949 |
| rpl13 | rpl13/rps9 | MCBB_1345 | MCBB_1344 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Fused L13/S9 ribosomal protein; L13 protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (By similarity). the 30S ribosomal subunit (By similarity). protein L13P family. protein S9P family. ribosomal subunit, and that they are not known to contact each other in the ribosome, this may be incorrectly predicted and should perhaps be two separate genes; sp|O26146|RLSX_METTH;evalue=9e-049; PctID=71.43; score=191. | 0.999 |
| rpl13 | rps10 | MCBB_1345 | MCBB_0262 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
| rpl13 | rps12 | MCBB_1345 | MCBB_0258 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. | 0.999 |
| rpl13 | rps19 | MCBB_1345 | MCBB_1377 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
| rpl13 | rps4 | MCBB_1345 | MCBB_1349 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| rpl13 | rps7 | MCBB_1345 | MCBB_0259 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| rpl13 | rps8 | MCBB_1345 | MCBB_1366 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
| rpl13 | rsmA | MCBB_1345 | MCBB_2215 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Putative ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily. | 0.938 |
| rpl13 | rtcA | MCBB_1345 | MCBB_1386 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.865 |
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