STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L21_0583Nucleotidyltransferase domain protein. (194 aa)    
Predicted Functional Partners:
L21_0584
Hypothetical protein.
       0.780
L21_0525
Hypothetical protein.
   
 
 0.701
L21_0531
Hypothetical protein.
   
 
 0.701
L21_2424
Hypothetical protein.
   
 
 0.701
L21_2663
Hypothetical protein.
   
 
 0.701
ywaD
Arginyl aminopeptidase.
       0.589
L21_0582
Hypothetical protein.
       0.472
Your Current Organism:
Methanoculleus chikugoensis
NCBI taxonomy Id: 118126
Other names: DSM 13459, JCM 10825, M. chikugoensis, Methaniculleus sp. MG62, Methanoculleus chikugoensis Dianou et al. 2001, Methanoculleus sp. MG62, NBRC 101202, strain MG62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.