STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L21_0809Transglutaminase-like superfamily protein. (182 aa)    
Predicted Functional Partners:
guaA_1
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
  0.701
guaA_2
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
  0.689
L21_1688
GMP synthase subunit A.
  
 
  0.689
surE
5'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
    
  0.671
L21_0810
pro-sigmaK processing inhibitor BofA.
       0.662
purH
Bifunctional purine biosynthesis protein PurH.
    
  0.653
yfkN
Trifunctional nucleotide phosphoesterase protein YfkN precursor.
    
  0.651
L21_2246
Phosphoglycolate phosphatase.
    
  0.651
yhcR
Endonuclease YhcR precursor.
    
  0.651
L21_0808
Dihydropyrimidine dehydrogenase subunit A.
       0.458
Your Current Organism:
Methanoculleus chikugoensis
NCBI taxonomy Id: 118126
Other names: DSM 13459, JCM 10825, M. chikugoensis, Methaniculleus sp. MG62, Methanoculleus chikugoensis Dianou et al. 2001, Methanoculleus sp. MG62, NBRC 101202, strain MG62
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