STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yodCPutative NAD(P)H nitroreductase YodC. (175 aa)    
Predicted Functional Partners:
hldE
Bifunctional protein HldE; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme.
    
  0.917
L21_1006
Hypothetical protein.
       0.891
adoK
Adenosine kinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.851
L21_1008
Hypothetical protein; Belongs to the UPF0212 family.
       0.820
lcfB_1
Long-chain-fatty-acid-CoA ligase.
   
 
 0.785
lcfB_2
Long-chain-fatty-acid-CoA ligase.
   
 
 0.785
fgd_1
F420-dependent glucose-6-phosphate dehydrogenase.
 
 
 0.768
fgd_2
F420-dependent glucose-6-phosphate dehydrogenase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.
 
 
 0.755
L21_0890
Phosphoribosyltransferase; Belongs to the UPF0284 family.
  
 
 0.736
flr
Flavoredoxin.
  
 
 0.732
Your Current Organism:
Methanoculleus chikugoensis
NCBI taxonomy Id: 118126
Other names: DSM 13459, JCM 10825, M. chikugoensis, Methaniculleus sp. MG62, Methanoculleus chikugoensis Dianou et al. 2001, Methanoculleus sp. MG62, NBRC 101202, strain MG62
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