STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dpnMModification methylase DpnIIA. (325 aa)    
Predicted Functional Partners:
yhdJ_1
DNA adenine methyltransferase YhdJ.
 
  
 0.856
L21_1501
Transposase.
       0.604
yhdJ_2
DNA adenine methyltransferase YhdJ.
 
  
 0.523
yhdJ_3
DNA adenine methyltransferase YhdJ.
 
  
 0.521
guaB_2
Inosine-5'-monophosphate dehydrogenase.
 
  
 0.518
L21_2246
Phosphoglycolate phosphatase.
  
  
 0.518
L21_0005
Recombination protein F.
 
    0.516
L21_1265
Hypothetical protein.
     
 0.469
kinE_1
Sporulation kinase E.
       0.444
L21_0838
Helix-turn-helix domain of resolvase.
  
    0.422
Your Current Organism:
Methanoculleus chikugoensis
NCBI taxonomy Id: 118126
Other names: DSM 13459, JCM 10825, M. chikugoensis, Methaniculleus sp. MG62, Methanoculleus chikugoensis Dianou et al. 2001, Methanoculleus sp. MG62, NBRC 101202, strain MG62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.