Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
L21_1663Hypothetical protein. (104 aa)    
Predicted Functional Partners:
L21_1664
Hypothetical protein.
       0.685
L21_1665
Hypothetical protein.
       0.685
rtcB
RNA-splicing ligase RtcB; Belongs to the RtcB family.
       0.676
L21_1667
Hypothetical protein.
       0.668
birA
Bifunctional protein BirA.
       0.557
L21_1668
Hypothetical protein.
       0.549
uppS-2
(2Z,6E)-farnesyl diphosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
       0.538
L21_0046
His-Xaa-Ser system radical SAM maturase HxsC.
       0.538
bioY
Biotin ECF transporter S component BioY.
       0.445
ecfA1_1
Energy-coupling factor transporter ATP-binding protein EcfA1.
       0.445
Your Current Organism:
Methanoculleus chikugoensis
NCBI taxonomy Id: 118126
Other names: DSM 13459, JCM 10825, M. chikugoensis, Methaniculleus sp. MG62, Methanoculleus chikugoensis Dianou et al. 2001, Methanoculleus sp. MG62, NBRC 101202, strain MG62
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