STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L21_1882Hypothetical protein. (337 aa)    
Predicted Functional Partners:
apt
Adenine phosphoribosyltransferase.
 
  
  0.783
alkA
DNA-3-methyladenine glycosylase.
  
 
  0.752
L21_2539
S-methyl-5'-thioinosine phosphorylase.
    
  0.740
L21_1794
Phosphoglycolate phosphatase.
 
  
  0.702
algC_1
Phosphomannomutase/phosphoglucomutase.
    
  0.674
algC_2
Phosphomannomutase/phosphoglucomutase.
    
  0.674
glmM
Phosphoglucosamine mutase.
    
  0.674
yfkN
Trifunctional nucleotide phosphoesterase protein YfkN precursor.
   
 
  0.667
yhcR
Endonuclease YhcR precursor.
   
 
  0.667
L21_2246
Phosphoglycolate phosphatase.
    
  0.660
Your Current Organism:
Methanoculleus chikugoensis
NCBI taxonomy Id: 118126
Other names: DSM 13459, JCM 10825, M. chikugoensis, Methaniculleus sp. MG62, Methanoculleus chikugoensis Dianou et al. 2001, Methanoculleus sp. MG62, NBRC 101202, strain MG62
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