STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L21_2183Translocation protein TolB. (860 aa)    
Predicted Functional Partners:
L21_0592
Hypothetical protein.
    
  0.915
L21_2033
Dehydrogenase, PQQ-dependent, s-GDH family.
 
  
  0.510
L21_2150
Pectate lyase superfamily protein.
  
 
 0.503
L21_1805
Putative carboxyl-terminal-processing protease, deltaproteobacterial.
 
 
  0.499
trpG
Anthranilate synthase component II.
  
 
  0.466
L21_2192
Methanogenesis imperfect marker protein 11.
 
    0.465
hicd
Homoisocitrate dehydrogenase.
 
     0.459
L21_2186
Hypothetical protein.
 
     0.454
L21_2147
Hypothetical protein.
 
  
  0.452
L21_2042
Hypothetical protein.
 
  
  0.443
Your Current Organism:
Methanoculleus chikugoensis
NCBI taxonomy Id: 118126
Other names: DSM 13459, JCM 10825, M. chikugoensis, Methaniculleus sp. MG62, Methanoculleus chikugoensis Dianou et al. 2001, Methanoculleus sp. MG62, NBRC 101202, strain MG62
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.