EDX76673.1 protein (Coleofasciculus chthonoplastes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EDX76673.1

Response regulator receiver domain protein; Controls heterocyst pattern formation. (432 aa)

Predicted Functional Partners:

EDX71158.1

0.985

EDX70848.1

0.980

EDX76526.1

0.980

EDX72708.1

0.980

EDX77984.1

0.980

EDX76978.1

0.977

EDX72559.1

0.977

EDX78539.1

0.971

EDX76814.1

0.960

EDX75095.1

0.960

Your Current Organism:

Coleofasciculus chthonoplastes

NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDX70848.1	EDX71158.1	MC7420_137	MC7420_2719	Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.	Hypothetical protein; [T] COG0784 FOG: CheY-like receiver; response regulator receiver domain, putative.	0.999
EDX70848.1	EDX72559.1	MC7420_137	MC7420_2467	Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.	PAS fold family; [T] COG0642 Signal transduction histidine kinase.	0.999
EDX70848.1	EDX72708.1	MC7420_137	MC7420_4981	Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.	PAS fold family; [T] COG0642 Signal transduction histidine kinase.	0.999
EDX70848.1	EDX75095.1	MC7420_137	MC7420_2099	Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.	PAS fold family; [T] COG0642 Signal transduction histidine kinase.	0.999
EDX70848.1	EDX76526.1	MC7420_137	MC7420_4782	Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.	PAS fold family; [T] COG0642 Signal transduction histidine kinase.	0.999
EDX70848.1	EDX76673.1	MC7420_137	MC7420_1676	Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.	Response regulator receiver domain protein; Controls heterocyst pattern formation.	0.980
EDX70848.1	EDX76814.1	MC7420_137	MC7420_1817	Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.	PAS fold family; [T] COG0642 Signal transduction histidine kinase.	0.999
EDX70848.1	EDX76978.1	MC7420_137	MC7420_1981	Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.	PAS fold family; [T] COG0642 Signal transduction histidine kinase.	0.999
EDX70848.1	EDX77984.1	MC7420_137	MC7420_7722	Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.	PAS fold family; [T] COG2203 FOG: GAF domain.	0.999
EDX70848.1	EDX78539.1	MC7420_137	MC7420_7192	Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.	Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.	0.999
EDX71158.1	EDX70848.1	MC7420_2719	MC7420_137	Hypothetical protein; [T] COG0784 FOG: CheY-like receiver; response regulator receiver domain, putative.	Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.	0.999
EDX71158.1	EDX72559.1	MC7420_2719	MC7420_2467	Hypothetical protein; [T] COG0784 FOG: CheY-like receiver; response regulator receiver domain, putative.	PAS fold family; [T] COG0642 Signal transduction histidine kinase.	0.999
EDX71158.1	EDX72708.1	MC7420_2719	MC7420_4981	Hypothetical protein; [T] COG0784 FOG: CheY-like receiver; response regulator receiver domain, putative.	PAS fold family; [T] COG0642 Signal transduction histidine kinase.	0.999
EDX71158.1	EDX75095.1	MC7420_2719	MC7420_2099	Hypothetical protein; [T] COG0784 FOG: CheY-like receiver; response regulator receiver domain, putative.	PAS fold family; [T] COG0642 Signal transduction histidine kinase.	0.999
EDX71158.1	EDX76526.1	MC7420_2719	MC7420_4782	Hypothetical protein; [T] COG0784 FOG: CheY-like receiver; response regulator receiver domain, putative.	PAS fold family; [T] COG0642 Signal transduction histidine kinase.	0.999
EDX71158.1	EDX76673.1	MC7420_2719	MC7420_1676	Hypothetical protein; [T] COG0784 FOG: CheY-like receiver; response regulator receiver domain, putative.	Response regulator receiver domain protein; Controls heterocyst pattern formation.	0.985
EDX71158.1	EDX76814.1	MC7420_2719	MC7420_1817	Hypothetical protein; [T] COG0784 FOG: CheY-like receiver; response regulator receiver domain, putative.	PAS fold family; [T] COG0642 Signal transduction histidine kinase.	0.999
EDX71158.1	EDX76978.1	MC7420_2719	MC7420_1981	Hypothetical protein; [T] COG0784 FOG: CheY-like receiver; response regulator receiver domain, putative.	PAS fold family; [T] COG0642 Signal transduction histidine kinase.	0.999
EDX71158.1	EDX77984.1	MC7420_2719	MC7420_7722	Hypothetical protein; [T] COG0784 FOG: CheY-like receiver; response regulator receiver domain, putative.	PAS fold family; [T] COG2203 FOG: GAF domain.	0.999
EDX71158.1	EDX78539.1	MC7420_2719	MC7420_7192	Hypothetical protein; [T] COG0784 FOG: CheY-like receiver; response regulator receiver domain, putative.	Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.	0.999

page 1 of 6

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About