STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX76831.1Cytidine and deoxycytidylate deaminase zinc-binding region domain protein; [FJ] COG0590 Cytosine/adenosine deaminases. (143 aa)    
Predicted Functional Partners:
hisI
[E] COG0139 Phosphoribosyl-AMP cyclohydrolase; In the N-terminal section; belongs to the PRA-CH family.
   
  
 0.853
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase family; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.842
EDX75375.1
[C] COG1062 Zn-dependent alcohol dehydrogenases, class III; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
 
  0.808
EDX74286.1
[L] COG0708 Exonuclease III.
   
 
 0.747
EDX74214.1
Endonuclease/exonuclease/phosphatase family.
   
 
 0.747
tilS
PP-loop family; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
 
 
 0.710
EDX78194.1
Thymidylate synthase, putative; [F] COG0207 Thymidylate synthase.
  
 
 0.706
EDX77137.1
Amidohydrolase family, putative; [FR] COG0402 Cytosine deaminase and related metal-dependent hydrolases.
    
 0.695
EDX70733.1
Hypothetical protein; [F] COG0572 Uridine kinase.
   
 
 0.682
EDX70564.1
[F] COG0035 Uracil phosphoribosyltransferase; Belongs to the UPRTase family.
   
 0.672
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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