STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX75173.1Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (98 aa)    
Predicted Functional Partners:
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase family; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.778
EDX72999.1
GAF domain protein; [T] COG2206 HD-GYP domain.
    
  0.692
EDX71603.1
YHS domain family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
      0.536
EDX75959.1
PAS fold family; [T] COG2202 FOG: PAS/PAC domain.
    
  0.491
EDX72672.1
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
    
  0.487
EDX78219.1
PAS fold family; [R] COG0517 FOG: CBS domain.
    
  0.484
EDX75560.1
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
    
  0.480
EDX72688.1
PAS fold family; [T] COG5002 Signal transduction histidine kinase.
    
  0.480
EDX78558.1
Hypothetical protein; [H] COG0807 GTP cyclohydrolase II.
    
  0.456
EDX75107.1
Cysteine dioxygenase type I superfamily; [R] COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily.
       0.437
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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