STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX72823.1Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (341 aa)    
Predicted Functional Partners:
EDX72859.1
CRISPR-associated protein, Crm2 family, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
 0.958
EDX72778.1
CRISPR-associated RAMP protein; [L] COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily).
 
     0.862
EDX72868.1
CRISPR-associated RAMP protein, SSO1426 family; [L] COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily).
 
     0.830
EDX72350.1
Hypothetical protein; [R] COG1353 Predicted hydrolase of the HD superfamily (permuted catalytic motifs).
  
 
 0.815
EDX74090.1
Hypothetical protein; [R] COG1353 Predicted hydrolase of the HD superfamily (permuted catalytic motifs).
  
 
 0.815
EDX73189.1
Hypothetical protein; [R] COG1353 Predicted hydrolase of the HD superfamily (permuted catalytic motifs).
  
 
 0.815
EDX72822.1
CRISPR-associated RAMP protein; [L] COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily).
 
     0.791
EDX72909.1
CRISPR-associated RAMP protein, Csx10 family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
    0.789
EDX72787.1
CRISPR-associated protein Cas6, putative; [S] COG5551 Uncharacterized conserved protein.
 
   
 0.751
EDX71627.1
Helix-turn-helix domain protein; [K] COG1396 Predicted transcriptional regulators.
 
     0.727
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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