STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX76597.1Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat. (175 aa)    
Predicted Functional Partners:
EDX72635.1
[M] COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.718
EDX76333.1
Bacterial extracellular solute-binding protein, family 3; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
       0.678
EDX74563.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.662
EDX70863.1
Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat.
  
     0.655
EDX72202.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.623
EDX74975.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.595
EDX73573.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.563
EDX77259.1
Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat.
  
     0.551
EDX73098.1
Outer membrane protein, OMP85 family, putative; [M] COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.535
EDX72724.1
Outer membrane protein, OMP85 family, putative; [M] COG4775 Outer membrane protein/protective antigen OMA87.
  
     0.531
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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