STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX73843.1Squalene and phytoene synthases superfamily; [I] COG1562 Phytoene/squalene synthetase. (299 aa)    
Predicted Functional Partners:
EDX77293.1
FAD dependent oxidoreductase, putative; [Q] COG1233 Phytoene dehydrogenase and related proteins.
 
 0.989
EDX73910.1
Phytoene desaturase; [S] COG3349 Uncharacterized conserved protein.
  
 0.988
EDX78730.1
FAD dependent oxidoreductase, putative; [Q] COG1233 Phytoene dehydrogenase and related proteins.
 
 0.949
EDX73275.1
C-3',4' desaturase CrtD; [Q] COG1233 Phytoene dehydrogenase and related proteins.
 
 
 0.948
EDX71735.1
FAD dependent oxidoreductase, putative; [Q] COG1233 Phytoene dehydrogenase and related proteins.
 
 
 0.946
EDX74870.1
[C] COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
     
 0.945
EDX75881.1
Carotene isomerase; [Q] COG1233 Phytoene dehydrogenase and related proteins.
 
 
 0.942
EDX70866.1
[I] COG3000 Sterol desaturase.
  
 0.921
EDX77499.1
Hypothetical protein.
  
 0.921
EDX78202.1
Fatty acid hydroxylase superfamily; [I] COG3000 Sterol desaturase.
  
 0.921
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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