STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX74010.1Alpha amylase, catalytic domain subfamily, putative; [G] COG0366 Glycosidases. (573 aa)    
Predicted Functional Partners:
EDX71788.1
[E] COG0531 Amino acid transporters.
    
 0.898
EDX78201.1
[E] COG0531 Amino acid transporters.
    
 0.898
EDX76611.1
Alpha amylase, catalytic domain subfamily, putative; [G] COG0366 Glycosidases.
 
0.810
EDX73962.1
Hypothetical protein; [R] COG0637 Predicted phosphatase/phosphohexomutase.
  
 0.807
EDX71269.1
Cellulase (glycosyl hydrolase family 5), putative; [G] COG2730 Endoglucanase.
    
 0.724
EDX72627.1
Alpha amylase, catalytic domain subfamily, putative; [G] COG0366 Glycosidases.
 
0.694
EDX77542.1
Nucleotidyl transferase family; [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon).
    
 0.681
glgA
Glycogen/starch synthase, ADP-glucose type subfamily; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
 
 0.637
EDX70852.1
Kinase, pfkB family; [G] COG0524 Sugar kinases, ribokinase family.
 
 
 0.613
EDX75897.1
Glycogen debranching enzyme GlgX; [G] COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; Belongs to the glycosyl hydrolase 13 family.
 
 
0.613
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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