STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX75776.1Hypothetical protein; [F] COG0717 Deoxycytidine deaminase. (462 aa)    
Predicted Functional Partners:
EDX75840.1
Hypothetical protein; [L] COG5421 Transposase.
     0.993
EDX72909.1
CRISPR-associated RAMP protein, Csx10 family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.679
EDX72822.1
CRISPR-associated RAMP protein; [L] COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily).
  
     0.650
EDX72778.1
CRISPR-associated RAMP protein; [L] COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily).
  
     0.628
EDX72859.1
CRISPR-associated protein, Crm2 family, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.627
EDX72823.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.580
EDX72868.1
CRISPR-associated RAMP protein, SSO1426 family; [L] COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily).
  
     0.580
EDX75969.1
Transposase, IS605 family; [L] COG0675 Transposase and inactivated derivatives.
  
     0.539
EDX76017.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.533
EDX74986.1
Trypsin domain protein; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1B family.
  
     0.501
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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