Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDX78330.1 | EDX78334.1 | MC7420_6983 | MC7420_6987 | Hypothetical protein. | Hypothetical protein. | 0.479 |
EDX78330.1 | EDX78489.1 | MC7420_6983 | MC7420_7142 | Hypothetical protein. | Hypothetical protein. | 0.773 |
EDX78330.1 | uvrC | MC7420_6983 | MC7420_7287 | Hypothetical protein. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.535 |
EDX78334.1 | EDX78330.1 | MC7420_6987 | MC7420_6983 | Hypothetical protein. | Hypothetical protein. | 0.479 |
EDX78489.1 | EDX78330.1 | MC7420_7142 | MC7420_6983 | Hypothetical protein. | Hypothetical protein. | 0.773 |
EDX78489.1 | uvrC | MC7420_7142 | MC7420_7287 | Hypothetical protein. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.534 |
uvrC | EDX78330.1 | MC7420_7287 | MC7420_6983 | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Hypothetical protein. | 0.535 |
uvrC | EDX78489.1 | MC7420_7287 | MC7420_7142 | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Hypothetical protein. | 0.534 |