STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX78374.1Pentapeptide repeat protein; [S] COG1357 Uncharacterized low-complexity proteins. (434 aa)    
Predicted Functional Partners:
EDX77058.1
Pentapeptide repeat protein; [S] COG1357 Uncharacterized low-complexity proteins.
  
     0.746
EDX73855.1
Pentapeptide repeat protein; [S] COG1357 Uncharacterized low-complexity proteins.
  
     0.682
EDX76814.1
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
    
  0.573
EDX75095.1
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
    
  0.573
EDX77172.1
DNA gyrase, B subunit; [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit.
    
   0.489
EDX78539.1
Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.
    
  0.435
EDX78767.1
[C] COG4451 Ribulose bisphosphate carboxylase small subunit.
       0.433
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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