STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX78597.1Carbohydrate-selective porin, OprB family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the OprB family. (544 aa)    
Predicted Functional Partners:
EDX72067.1
Hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.771
EDX78811.1
[S] COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain; M protein repeat.
  
     0.758
EDX75459.1
[NU] COG3166 Tfp pilus assembly protein PilN.
  
     0.753
EDX78196.1
Putative permease, YjgP/YjgQ family; [R] COG0795 Predicted permeases.
  
     0.744
EDX75353.1
Transcriptional regulator, AbrB family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.732
EDX78035.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.714
EDX71579.1
Hypothetical protein; [R] COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
  
     0.702
EDX73098.1
Outer membrane protein, OMP85 family, putative; [M] COG4775 Outer membrane protein/protective antigen OMA87.
  
   
 0.698
EDX76815.1
Outer membrane protein, OMP85 family, putative; [M] COG4775 Outer membrane protein/protective antigen OMA87.
  
   
 0.686
EDX71943.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.675
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.