STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX78683.1Pentapeptide repeat protein; [S] COG1357 Uncharacterized low-complexity proteins. (295 aa)    
Predicted Functional Partners:
EDX78692.1
Hypothetical protein.
       0.741
EDX77058.1
Pentapeptide repeat protein; [S] COG1357 Uncharacterized low-complexity proteins.
  
     0.681
EDX73855.1
Pentapeptide repeat protein; [S] COG1357 Uncharacterized low-complexity proteins.
  
     0.666
EDX76814.1
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
    
  0.573
EDX75095.1
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
    
  0.573
EDX78371.1
Ferritin-like domain subfamily; [S] COG1633 Uncharacterized conserved protein.
       0.493
EDX77172.1
DNA gyrase, B subunit; [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit.
    
   0.489
EDX78605.1
Hypothetical protein.
       0.489
EDX78539.1
Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.
    
  0.435
ispF
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
       0.418
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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