STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX78717.1Hypothetical protein; [R] COG2319 FOG: WD40 repeat; WD domain, G-beta repeat. (915 aa)    
Predicted Functional Partners:
EDX77055.1
Hypothetical protein.
    
 0.776
EDX73211.1
Hypothetical protein; [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.
    
  0.771
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.751
EDX77060.1
GMC oxidoreductase family; [E] COG2303 Choline dehydrogenase and related flavoproteins.
    
  0.740
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
  0.707
EDX74289.1
Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat.
   
  0.669
EDX76986.1
Dual specificity phosphatase, catalytic domain protein.
   
 0.667
EDX77696.1
Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat.
    
  0.666
EDX74172.1
Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat.
    
  0.666
EDX72283.1
Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat.
 
  
  0.666
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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