STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX78771.1Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (433 aa)    
Predicted Functional Partners:
EDX78668.1
SLEI family; [R] COG0457 FOG: TPR repeat.
  
     0.730
EDX74115.1
Hypothetical protein; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
     0.723
EDX71250.1
PA14 domain protein; [R] COG3291 FOG: PKD repeat.
  
  
  0.722
EDX74373.1
Hypothetical protein; [R] COG3950 Predicted ATP-binding protein involved in virulence.
  
     0.714
EDX76830.1
Hypothetical protein; [T] COG5635 Predicted NTPase (NACHT family).
  
     0.709
EDX71269.1
Cellulase (glycosyl hydrolase family 5), putative; [G] COG2730 Endoglucanase.
    
 0.709
EDX78119.1
Tetratricopeptide repeat family; [R] COG0457 FOG: TPR repeat.
  
     0.676
EDX72263.1
Hypothetical protein; [T] COG5635 Predicted NTPase (NACHT family).
  
     0.637
EDX74504.1
Hypothetical protein; [L] COG3415 Transposase and inactivated derivatives.
  
     0.631
EDX78813.1
Carbohydrate-selective porin, OprB family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the OprB family.
  
     0.625
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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