STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmd-2GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (361 aa)    
Predicted Functional Partners:
fcl
NAD dependent epimerase/dehydratase family; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 0.995
EDX76117.1
Nucleotidyl transferase superfamily; [M] COG0836 Mannose-1-phosphate guanylyltransferase.
 
 
 0.846
EDX77542.1
Nucleotidyl transferase family; [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon).
    
 0.841
EDX75621.1
Thioredoxin, putative; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.
    
   0.834
cugP
Nucleotidyl transferase family; Catalyzes the formation of UDP-glucose, from UTP and glucose 1-phosphate.
    
 0.761
EDX78833.1
Bacterial sugar transferase, putative; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.759
EDX72400.1
Polysaccharide biosynthesis protein; [MG] COG1086 Predicted nucleoside-diphosphate sugar epimerases.
  
  
 0.687
EDX72513.1
Polysaccharide biosynthesis protein; [MG] COG1086 Predicted nucleoside-diphosphate sugar epimerases.
  
  
 0.687
EDX73442.1
[G] COG0662 Mannose-6-phosphate isomerase.
  
 
 0.671
EDX72954.1
DegT/DnrJ/EryC1/StrS aminotransferase family; [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
    
 0.646
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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