STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX77976.1LD-carboxypeptidase superfamily; [V] COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF. (338 aa)    
Predicted Functional Partners:
EDX75767.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
    
  0.810
EDX78015.1
Hypothetical protein.
       0.773
EDX71264.1
[M] COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4).
 
  
 0.764
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region domain protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
      0.691
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
    
 0.600
EDX75575.1
Penicillin-binding Protein dimerisation domain family; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
    
 0.509
EDX76496.1
Glycosyl hydrolase family 3 N terminal domain protein; [G] COG1472 Beta-glucosidase-related glycosidases.
  
   
 0.455
EDX75069.1
Mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.
 
  
 0.453
EDX75408.1
Peptidase, S9A/B/C family, catalytic domain protein; [E] COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
      0.448
guaA
GMP synthase, C-terminal domain protein; Catalyzes the synthesis of GMP from XMP.
     
 0.432
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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