Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EDX71039.1 | EDX78307.1 | MC7420_6639 | MC7420_8045 | Putative methyltransferase; [L] COG0742 N6-adenine-specific methylase. | Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.785 |
| EDX71039.1 | rnpA | MC7420_6639 | MC7420_5063 | Putative methyltransferase; [L] COG0742 N6-adenine-specific methylase. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.616 |
| EDX71898.1 | EDX71934.1 | MC7420_5042 | MC7420_5078 | 60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC. | R3H domain protein; [R] COG1847 Predicted RNA-binding protein. | 0.956 |
| EDX71898.1 | EDX78014.1 | MC7420_5042 | MC7420_7752 | 60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC. | R3H domain protein; [S] COG3854 Uncharacterized protein conserved in bacteria. | 0.858 |
| EDX71898.1 | EDX78307.1 | MC7420_5042 | MC7420_8045 | 60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC. | Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.867 |
| EDX71898.1 | rnpA | MC7420_5042 | MC7420_5063 | 60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.873 |
| EDX71898.1 | rplB | MC7420_5042 | MC7420_5417 | 60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.881 |
| EDX71898.1 | rplD | MC7420_5042 | MC7420_5684 | 60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC. | Ribosomal protein L4/L1 family; Forms part of the polypeptide exit tunnel. | 0.916 |
| EDX71898.1 | rpmF | MC7420_5042 | MC7420_6542 | 60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC. | [J] COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.898 |
| EDX71898.1 | secE | MC7420_5042 | MC7420_1252 | 60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC. | Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.972 |
| EDX71934.1 | EDX71898.1 | MC7420_5078 | MC7420_5042 | R3H domain protein; [R] COG1847 Predicted RNA-binding protein. | 60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC. | 0.956 |
| EDX71934.1 | EDX78307.1 | MC7420_5078 | MC7420_8045 | R3H domain protein; [R] COG1847 Predicted RNA-binding protein. | Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.670 |
| EDX71934.1 | rnpA | MC7420_5078 | MC7420_5063 | R3H domain protein; [R] COG1847 Predicted RNA-binding protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.714 |
| EDX71934.1 | rplB | MC7420_5078 | MC7420_5417 | R3H domain protein; [R] COG1847 Predicted RNA-binding protein. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.636 |
| EDX78014.1 | EDX71898.1 | MC7420_7752 | MC7420_5042 | R3H domain protein; [S] COG3854 Uncharacterized protein conserved in bacteria. | 60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC. | 0.858 |
| EDX78014.1 | EDX78307.1 | MC7420_7752 | MC7420_8045 | R3H domain protein; [S] COG3854 Uncharacterized protein conserved in bacteria. | Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.670 |
| EDX78014.1 | rnpA | MC7420_7752 | MC7420_5063 | R3H domain protein; [S] COG3854 Uncharacterized protein conserved in bacteria. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.696 |
| EDX78014.1 | rplB | MC7420_7752 | MC7420_5417 | R3H domain protein; [S] COG3854 Uncharacterized protein conserved in bacteria. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.636 |
| EDX78307.1 | EDX71039.1 | MC7420_8045 | MC7420_6639 | Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Putative methyltransferase; [L] COG0742 N6-adenine-specific methylase. | 0.785 |
| EDX78307.1 | EDX71898.1 | MC7420_8045 | MC7420_5042 | Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC. | 0.867 |
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