STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDX75010.1Cysteine desulfurase, SufS subfamily; [E] COG0520 Selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (420 aa)    
Predicted Functional Partners:
EDX74886.1
FeS assembly ATPase SufC; [O] COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
  
 0.988
EDX74901.1
FeS assembly protein SufD; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 0.982
EDX74812.1
FeS assembly protein SufB; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 0.981
EDX77232.1
Hypothetical protein; [C] COG0822 NifU homolog involved in Fe-S cluster formation; NifU-like N terminal domain, putative.
 
 0.976
EDX77726.1
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
 0.965
EDX72873.1
Fe-S metabolism associated domain subfamily; [R] COG2166 SufE protein probably involved in Fe-S center assembly.
 
 0.946
EDX78465.1
Endonuclease/exonuclease/phosphatase family.
   
   0.817
EDX76926.1
Endonuclease/exonuclease/phosphatase family; [R] COG3568 Metal-dependent hydrolase.
    
   0.811
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.789
EDX70566.1
Selenide, water dikinase, putative; [E] COG0709 Selenophosphate synthase.
   
 0.764
Your Current Organism:
Coleofasciculus chthonoplastes
NCBI taxonomy Id: 118168
Other names: C. chthonoplastes PCC 7420, Coleofasciculus chthonoplastes PCC 7420, Microcoleus chthonoplastes PCC 7420, Microcoleus sp. PCC 7420
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