STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_14022ATP-dependent RNA helicase DQX1. (240 aa)    
Predicted Functional Partners:
N307_15080
Something about silencing protein 10.
   
 0.960
N307_00972
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
   
 0.948
N307_09733
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.920
N307_09798
Small nuclear ribonucleoprotein F.
   
 0.917
N307_00213
Ribosome biogenesis protein BMS1.
   
 
 0.914
N307_06256
U3 small nucleolar RNA-associated protein 14 A.
   
 0.913
N307_14096
Small nuclear ribonucleoprotein Sm D3.
   
 0.909
N307_02899
Small nuclear ribonucleoprotein-associated protein B.
   
  0.908
N307_07755
Nucleolar protein 58.
   
 
 0.906
N307_08803
Protein RRP5.
  
 0.904
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.