STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_11732DNA repair protein complementing XP-C cells. (826 aa)    
Predicted Functional Partners:
N307_00236
UV excision repair protein RAD23 B.
   
 0.999
N307_09243
General transcription factor IIH subunit 1.
    
 0.983
N307_15143
Centrin-1.
    
 0.980
N307_04410
TFIIH basal transcription factor complex helicase XPB subunit.
   
 0.974
N307_12174
Centrin-3.
    
 0.941
N307_12894
Isoprenoid synthase domain-containing protein.
    
 0.937
N307_12218
General transcription factor IIH subunit 2.
    
 0.917
N307_01630
DNA damage-binding protein 2.
   
 0.909
N307_14486
DNA repair protein complementing XP-A cells.
    
 0.894
N307_02227
Ubiquitin-40S ribosomal protein S27a.
    
 0.893
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.