STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_12668Protein LSM14 B. (346 aa)    
Predicted Functional Partners:
N307_12566
Putative ATP-dependent RNA helicase DDX6.
   
 
 0.963
N307_14078
Eukaryotic translation initiation factor 4E transporter.
   
 
 0.925
N307_00266
M7GpppN-mRNA hydrolase.
    
 
 0.891
N307_07792
mRNA-decapping enzyme 1A.
    
 
 0.885
N307_15389
Enhancer of mRNA-decapping protein 3.
    
 
 0.843
N307_12641
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 
 0.740
N307_10302
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 
 0.740
N307_14170
Uncharacterized protein C17orf64.
   
 
 0.668
N307_02630
Chromodomain-helicase-DNA-binding protein 1.
   
 
 0.668
N307_07527
Chromodomain-helicase-DNA-binding protein 2.
   
 
 0.668
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.