STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_14029Zinc transporter 9. (443 aa)    
Predicted Functional Partners:
N307_09246
Ubiquitin-conjugating enzyme E2 variant 3.
  
    0.661
N307_04390
Natural resistance-associated macrophage protein 1.
   
 
 0.659
N307_09990
E3 ubiquitin-protein ligase RNF138.
  
    0.627
N307_07895
Malate dehydrogenase.
  
    0.627
N307_09989
E3 ubiquitin-protein ligase RNF125.
  
    0.627
N307_10648
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
    0.627
N307_13393
Malate dehydrogenase.
  
    0.627
N307_04159
Putative malate dehydrogenase 1B.
  
    0.627
N307_09244
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
    0.627
N307_04258
Unhealthy ribosome biogenesis protein 2.
  
    0.627
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.