STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_08261Uncharacterized protein FLJ43738. (397 aa)    
Predicted Functional Partners:
N307_04120
Fanconi anemia group M protein.
  
 0.875
N307_01168
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.871
N307_13234
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
 0.869
N307_05296
Actin-like 6A; Belongs to the actin family.
   
 0.863
N307_02909
Actin-related protein 5; Belongs to the actin family.
    
 0.856
N307_09894
Ubiquitin-conjugating enzyme E2 variant 1.
    
 0.808
N307_02610
Nuclear factor related to kappa-B-binding protein.
   
 0.798
N307_02293
Ubiquitin-conjugating enzyme E2 variant 2.
    
 0.779
N307_14298
RNA polymerase II-associated protein 3.
   
 0.769
N307_05120
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
 0.752
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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