STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_06936Cystine/glutamate transporter. (483 aa)    
Predicted Functional Partners:
N307_03666
Uncharacterized protein KIAA0513.
   
 0.785
N307_00948
Alpha-ketoglutarate-dependent dioxygenase alkB 2.
   
 0.785
N307_15273
Alpha-ketoglutarate-dependent dioxygenase alkB 3.
   
 0.785
N307_09663
CD44 antigen.
    
 
 0.711
N307_11750
DHQ_synthase domain-containing protein.
   
 0.704
N307_02067
Peroxisomal NADH pyrophosphatase NUDT12.
  
  0.603
N307_03144
Alpha-amylase.
   
 0.561
N307_03145
Alpha-amylase.
   
 0.561
N307_04073
Hepatocyte growth factor receptor.
    
  0.509
N307_07793
Transketolase.
   
 0.509
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.