STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_10116Sequestosome-1. (396 aa)    
Predicted Functional Partners:
N307_12953
Gamma-aminobutyric acid receptor-associated protein-like 2.
   
 0.983
N307_01474
Kelch-like 17.
    
 0.976
N307_10656
Gamma-aminobutyric acid receptor-associated protein-like 1.
   
 0.972
N307_07331
Polyubiquitin-B.
   
 0.969
N307_04812
Receptor-interacting serine/threonine-protein kinase 1.
   
 0.942
N307_02577
Microtubule-associated proteins 1A/1B light chain 3A.
   
 0.938
N307_03664
Microtubule-associated proteins 1A/1B light chain 3B.
   
 0.938
N307_15340
Serine/threonine-protein kinase TBK1.
    
 0.929
N307_13427
Ubiquitin carboxyl-terminal hydrolase CYLD.
    
 0.928
N307_03229
Protein kinase C iota type; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.
    
 0.924
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.