STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_07650Methionine-R-sulfoxide reductase B1. (75 aa)    
Predicted Functional Partners:
N307_12289
Thioredoxin.
   
 0.740
N307_01503
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.
   
 
 0.688
N307_13891
Thioredoxin domain-containing protein 3.
  
 0.674
N307_05313
Uncharacterized protein.
    
 
 0.632
N307_08563
Thioredoxin domain-containing protein 6.
   
 0.621
N307_13368
PMSR domain-containing protein.
  
 
 0.612
N307_13655
Mitochondrial peptide methionine sulfoxide reductase.
  
 
 0.612
N307_14542
Uncharacterized protein.
   
 
 0.597
N307_14120
Uncharacterized protein.
  
  
 0.596
N307_13416
Selenoprotein O.
  
  
 0.589
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.