STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_03390Inhibitor of nuclear factor kappa-B kinase subunit epsilon. (518 aa)    
Predicted Functional Partners:
N307_03860
TNF receptor-associated factor 3.
   
 0.978
N307_03549
Stimulator of interferon genes protein.
   
 0.975
N307_14779
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.928
N307_13427
Ubiquitin carboxyl-terminal hydrolase CYLD.
   
 0.920
N307_10116
Sequestosome-1.
    
 0.890
N307_11405
Tumor necrosis factor receptor superfamily member 1A.
    
 0.889
N307_04816
Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.
   
 0.868
N307_05533
Signal transducer and activator of transcription 5B.
   
 0.860
N307_03957
FGFR1 oncogene partner 2.
     
 0.860
N307_01763
5-azacytidine-induced protein 2.
   
 
 0.851
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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