N307_15147 protein (Picoides pubescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N307_15147

Spermatogenesis-associated protein 5. (778 aa)

Predicted Functional Partners:

N307_05702

0.999

N307_14112

0.977

N307_03310

0.973

N307_05675

0.970

N307_03399

0.966

N307_08412

0.962

N307_13079

0.962

N307_03163

0.950

N307_08436

0.944

N307_02837

0.939

Your Current Organism:

Picoides pubescens

NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N307_02837	N307_03163	A0A093GMZ5	A0A093G2W0	NSFL1 cofactor p47.	UBX domain-containing protein 4.	0.903
N307_02837	N307_03310	A0A093GMZ5	A0A093GPW4	NSFL1 cofactor p47.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.916
N307_02837	N307_03399	A0A093GMZ5	A0A093G6X1	NSFL1 cofactor p47.	Ubiquitin thioesterase OTU1.	0.927
N307_02837	N307_05702	A0A093GMZ5	A0A093IIK0	NSFL1 cofactor p47.	UBX domain-containing protein 7.	0.968
N307_02837	N307_08412	A0A093GMZ5	A0A093I4J9	NSFL1 cofactor p47.	UBX domain-containing protein 6.	0.994
N307_02837	N307_13079	A0A093GMZ5	A0A093IF81	NSFL1 cofactor p47.	Tether containing UBX domain for GLUT4.	0.980
N307_02837	N307_14112	A0A093GMZ5	A0A093I9E2	NSFL1 cofactor p47.	Ubiquitin fusion degradation protein 1.	0.969
N307_02837	N307_15147	A0A093GMZ5	A0A093G4B5	NSFL1 cofactor p47.	Spermatogenesis-associated protein 5.	0.939
N307_03163	N307_02837	A0A093G2W0	A0A093GMZ5	UBX domain-containing protein 4.	NSFL1 cofactor p47.	0.903
N307_03163	N307_05675	A0A093G2W0	A0A093GB44	UBX domain-containing protein 4.	E3 ubiquitin-protein ligase AMFR.	0.402
N307_03163	N307_05702	A0A093G2W0	A0A093IIK0	UBX domain-containing protein 4.	UBX domain-containing protein 7.	0.576
N307_03163	N307_08412	A0A093G2W0	A0A093I4J9	UBX domain-containing protein 4.	UBX domain-containing protein 6.	0.995
N307_03163	N307_13079	A0A093G2W0	A0A093IF81	UBX domain-containing protein 4.	Tether containing UBX domain for GLUT4.	0.961
N307_03163	N307_14112	A0A093G2W0	A0A093I9E2	UBX domain-containing protein 4.	Ubiquitin fusion degradation protein 1.	0.514
N307_03163	N307_15147	A0A093G2W0	A0A093G4B5	UBX domain-containing protein 4.	Spermatogenesis-associated protein 5.	0.950
N307_03310	N307_02837	A0A093GPW4	A0A093GMZ5	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	NSFL1 cofactor p47.	0.916
N307_03310	N307_05675	A0A093GPW4	A0A093GB44	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	E3 ubiquitin-protein ligase AMFR.	0.997
N307_03310	N307_14112	A0A093GPW4	A0A093I9E2	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Ubiquitin fusion degradation protein 1.	0.976
N307_03310	N307_15147	A0A093GPW4	A0A093G4B5	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Spermatogenesis-associated protein 5.	0.973
N307_03399	N307_02837	A0A093G6X1	A0A093GMZ5	Ubiquitin thioesterase OTU1.	NSFL1 cofactor p47.	0.927