STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_01074Sorting nexin-3. (109 aa)    
Predicted Functional Partners:
N307_15066
Vacuolar protein sorting-associated protein 35.
   
 0.975
N307_03275
Vacuolar protein sorting-associated protein 26B.
   
 0.914
N307_01271
Vacuolar protein sorting-associated protein 26A.
    
 0.911
N307_00912
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 0.861
N307_14760
Ribosomal protein S6 kinase delta-1.
     
 0.847
N307_02137
Sorting nexin-12.
  
  
 
0.792
N307_03683
Ubiquitin carboxyl-terminal hydrolase 10.
    
 0.708
N307_00259
Sorting nexin-1.
   
 
0.589
N307_14967
Sorting nexin-27.
    
 
 0.582
N307_11575
Ribosomal protein S6 kinase-like 1.
     
 0.573
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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