STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_03863Tectonin beta-propeller repeat-containing protein 2. (1388 aa)    
Predicted Functional Partners:
N307_00802
Vacuolar protein sorting-associated protein 41.
    
   0.993
N307_14011
Vacuolar protein sorting-associated protein 16.
    
 
 0.910
N307_15229
Vacuolar protein sorting-associated protein 18.
    
 
 0.737
N307_11283
Ectopic P granules protein 5.
   
  
 0.652
N307_13098
WD repeat domain phosphoinositide-interacting protein 3.
   
  
 0.615
N307_12567
Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.
   
  
 0.615
N307_04516
N-acetylserotonin O-methyltransferase-like.
      
 0.601
N307_00389
Spatacsin.
   
  
 0.590
N307_06024
Delta-1-pyrroline-5-carboxylate synthase.
      
 0.586
N307_05115
85/88 kDa calcium-independent phospholipase A2.
      
 0.584
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.