STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_06689Sister chromatid cohesion protein PDS5 A. (1328 aa)    
Predicted Functional Partners:
N307_08829
Structural maintenance of chromosomes protein 3.
   
 0.985
N307_09463
Wings apart-like.
   
 0.974
N307_14564
Double-strand-break repair protein rad21.
   
 0.946
N307_02840
Double-strand-break repair protein rad21-like 1.
   
 0.946
N307_14352
Cohesin subunit SA-2.
   
 0.941
N307_02419
Structural maintenance of chromosomes protein 1A.
   
 0.938
N307_13410
Structural maintenance of chromosomes protein 1B.
   
 0.938
N307_04507
Cohesin subunit SA-2.
   
 0.934
N307_07579
N-acetyltransferase ESCO1.
    
 0.927
N307_08249
N-acetyltransferase ESCO2.
    
 0.920
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.