STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_09106WW domain-containing adapter protein with coiled-coil. (604 aa)    
Predicted Functional Partners:
N307_09541
RNA polymerase-associated protein LEO1.
   
 
 0.967
N307_04466
RNA-binding protein 25.
   
 
 0.965
N307_02959
Cell division cycle 5-like.
   
 
 0.960
N307_12384
Splicing factor 3B subunit 3.
    
 
 0.912
N307_09733
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 
 0.905
N307_15052
E3 ubiquitin protein ligase.
   
 0.899
N307_04123
Pre-mRNA-processing factor 39.
    
 
 0.898
N307_05020
U1 small nuclear ribonucleoprotein 70 kDa.
    
 
 0.888
N307_00870
U11/U12 small nuclear ribonucleoprotein 35 kDa protein.
    
 
 0.888
N307_09798
Small nuclear ribonucleoprotein F.
    
 
 0.865
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.