STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_04590CDGSH iron-sulfur domain-containing protein 1. (97 aa)    
Predicted Functional Partners:
N307_09192
DNA damage-binding protein 1.
    
 
 0.920
N307_05739
DET1-and DDB1-associated protein 1.
    
 
 0.846
N307_04933
Inner nuclear membrane protein Man1.
    
 
 0.701
N307_10731
RNA-binding protein 39.
    
 
 0.701
N307_06596
Mitochondrial import receptor subunit TOM70.
      
 0.517
N307_14674
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5.
   
   0.473
N307_01132
Uncharacterized protein.
   
  
 0.464
N307_11582
Fe-S_biosyn domain-containing protein.
    
 
 0.450
N307_13173
ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]
   
 
 0.429
N307_11152
Iron-responsive element-binding protein 2; Belongs to the aconitase/IPM isomerase family.
    
 
 0.419
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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