STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_011452',5'-phosphodiesterase 12. (488 aa)    
Predicted Functional Partners:
N307_01564
CCR4-NOT transcription complex subunit 1.
   
 0.926
N307_04386
Cell differentiation protein RCD1.
    
 0.925
N307_10375
CCR4-NOT transcription complex subunit 2.
    
 0.915
N307_06704
CCR4-NOT transcription complex subunit 4.
    
 0.895
N307_12566
Putative ATP-dependent RNA helicase DDX6.
    
 0.859
N307_13714
CCR4-NOT transcription complex subunit 8.
    
 0.849
N307_12312
CCR4-NOT transcription complex subunit 7.
    
 0.849
N307_10774
Parafibromin.
   
 
 0.801
N307_09135
CCR4-NOT transcription complex subunit 11.
    
 0.717
N307_01750
CCR4-NOT transcription complex subunit 10.
    
 0.714
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.