STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_05434START domain-containing protein. (265 aa)    
Predicted Functional Partners:
N307_05347
Motile sperm domain-containing protein 1.
    
 0.706
N307_14895
Vesicle-associated membrane protein-associated protein A.
    
 0.706
N307_09857
Vesicle-associated membrane protein-associated protein B.
    
 0.706
N307_06477
2Fe-2S ferredoxin-type domain-containing protein.
   
 
 0.456
N307_12523
2Fe-2S ferredoxin-type domain-containing protein.
   
 
 0.456
N307_05782
Fatty acid desaturase 6.
     
 0.439
N307_05783
Pyr_redox_2 domain-containing protein.
     
 0.439
N307_10065
Voltage-dependent anion-selective channel protein 1.
     
 0.400
N307_06054
Voltage-dependent anion-selective channel protein 2.
     
 0.400
N307_07598
Voltage-dependent anion-selective channel protein 3.
     
 0.400
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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