STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_10157E3 ubiquitin-protein ligase Hakai. (489 aa)    
Predicted Functional Partners:
N307_03739
Pre-mRNA-splicing regulator WTAP.
    
 
 0.965
N307_14419
Protein virilizer.
    
 
 0.944
N307_03032
Zinc finger CCCH domain-containing protein 13.
    
 
 0.675
N307_03618
Cadherin-1; Cadherins are calcium-dependent cell adhesion proteins.
    
 
 0.654
N307_03619
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
    
 
 0.654
N307_06044
SERTA domain-containing protein 4.
    
  0.646
N307_15122
Methyltransferase-like 14; Belongs to the MT-A70-like family.
    
 
 0.643
N307_09116
DnaJ subfamily B member 6.
    
 
 0.596
N307_00262
Putative ATP-dependent RNA helicase YTHDC2.
      
 0.573
N307_11404
U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]
      
 0.566
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.