STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_14280Pseudouridylate synthase 7 homolog-like. (579 aa)    
Predicted Functional Partners:
N307_15185
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
   
 
 0.850
N307_02280
Ribosomal_L18e/L15P domain-containing protein.
   
   0.849
N307_03314
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
   
   0.844
N307_02201
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
   0.842
N307_14977
Uncharacterized protein.
  
   0.838
N307_08782
L51_S25_CI-B8 domain-containing protein.
   
   0.830
N307_09943
RNA pseudouridylate synthase domain-containing protein 3.
   
 
 0.829
N307_07658
RNA pseudouridylate synthase domain-containing protein 1.
   
 
 0.828
N307_06628
GTP-binding protein 8.
   
   0.827
N307_05295
Uncharacterized protein.
    
   0.827
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.