STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_05200E3 ubiquitin-protein ligase MYLIP. (417 aa)    
Predicted Functional Partners:
N307_15455
Very low-density lipoprotein receptor.
    
 0.874
N307_09026
Low-density lipoprotein receptor-related protein 8.
    
 0.874
N307_14990
Inner centromere protein.
   
 0.862
N307_09246
Ubiquitin-conjugating enzyme E2 variant 3.
    
 0.855
N307_00906
Uncharacterized protein.
    
 0.839
N307_10410
Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.
   
 0.826
N307_02051
Lysine-specific demethylase 6A.
   
 0.818
N307_02227
Ubiquitin-40S ribosomal protein S27a.
   
 0.810
N307_13839
ATP-synt_ab domain-containing protein.
   
 0.778
N307_13838
ATP-synt_ab domain-containing protein.
   
 0.778
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
Server load: low (20%) [HD]