STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N307_12227Putative D-tyrosyl-tRNA(Tyr) deacylase 2. (131 aa)    
Predicted Functional Partners:
N307_14667
Tyrosine--tRNA ligase.
  
  
 0.664
N307_13498
Transmembrane protein 9B.
      
 0.514
N307_12226
Iron-sulfur protein NUBPL.
  
  
 0.464
N307_09631
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase MESH1.
  
    0.458
N307_14264
Threonine--tRNA ligase, cytoplasmic.
     
 0.435
N307_06311
G2/M phase-specific E3 ubiquitin-protein ligase.
      
 0.422
N307_00930
Uncharacterized protein.
      
 0.412
N307_10721
Tyrosine--tRNA ligase.
     
 0.402
Your Current Organism:
Picoides pubescens
NCBI taxonomy Id: 118200
Other names: Dendrocopos pubescens, Downy woodpecker, Dryobates pubescens, P. pubescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.